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Mining co-regulated gene profiles for the detection of functional associations in gene expression data
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Supplementary material for: Gyenesei A., Wagner U., Barkow-Oesterreicher S., Stolte E. Schlapbach R. (2007): Mining co-regulated gene profiles for the detection of functional associations in gene expression data
Software and Data Files
| Expression Data: |
Yeast80.txt Compendium.txt SynthSampleData1.txt SynthSampleData2.txt SynthSampleData3.txt |
|
| Software | Demo executable file for Windows systems | MAPsoftware.zip |
| Instructions on how to use the software | SupplementaryData.pdf |
Results
|
Mining results of the synthetic and yeast data sets with the methods described in Gyenesei et al. (2007) , including: I.) Synthetic Gene-Expression Data Analysis II.) Yeast80 and Compendium Data Sets Analysis III.) Cluster Data IV.) Gene Ontology Results V.) Pathway Analysis VI.) Software usage |
SupplementaryData.pdf |
| Data files resulting from mining synthetic data sets using a the PNCGC method (Li et al., 2004) | PNCGC.zip |
| Profile data: Output of gene groups identified by the method described in Gyenesei et al. (2007) | ProfileData.zip |
| Cluster data: Output from the software, gene profiles are grouped by similarity; files are compatible for import into Maple Tree software (http://rana.lbl.gov/EisenSoftware.htm) | ClusterData.zip |
| The detailed results of the Gene Ontology Ernrichment analysis of all MAP profiles and bi-clusters using the ErmineJ software. | GOAnalysisYeast80.zip |
| All MAP Profiles and bi-clusters from different methods as graphs and lists | MAPProfilesAndBiclusters.zip |
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